Focus shift is a property of all optical systems. All lenses display focus shift; the question for practical purposes is whether the point at which the focus system indicates is within or outside the acceptable depth of field. Problems - out of focus photos - occur when the point at which you focus using the rangefinder in an RF camera or the ground glass in an SLR is outside the depth of field. The image projected rearwards has some room to shift if you use a recording medium with depth like film, but not on a digital sensor.
If the CZ Sonnar 50 was an f2.8 lens the design would probably be sufficiently conservative, and would control spherical aberrations sufficiently well, that there would probably be negligible focus shift. The residual aberrations and the focus shift they cause, magnify as the lens design is 'stretched' - i.e. the further from the native relative focal length for the design you go and the faster you make it.
Mechanically linking the aperture to the RF mechanism is possible but would be impossibly complicated. The best current strategy for managing focus shift but retaining wide-open focus would be to use AF cameras where the lens and camera exchange information and then for the focus to be corrected by the camera for the aperture. The Konica Hexar AF did this and was designed more than 20 years ago.
I am a little more tolerant of focus shift and softness than Chris is, but only a little. M7, Neopan 400, Noctilux, showing shift in the Hermitage, St Petersburg.
Marty