Thanks for your feedback everyone. This is something new for me as I have never had a lens that back focused this badly.
I have tested the Nokton wide open and it was so far off that I felt it had to be the lens. I know my Elmar 50/2.8 isn't exactly fast glass but it is basically right on with this camera. The back focus on the Nokton is far more obvious close up. A lot of my images with the lens have been at further distances so I did not notice this right away, and when I did I just chalked it up to bad technique. But looking back I realize that even some of my longer distance shots were a bit soft in some cases.
I am convinced that the camera's rangefinder is accurate though I will do a bit more testing with a longer lens. I did test the M9 with my newly arrived MS Optical Sonnetar 50/1.1 (what can I say, I love fast glass) and that particular lens is right on the money when focused wide open. In fact, it is so accurate that this is what started me questioning the focus accuracy of the Nokton. If it was my technique, why wasn't my technique just as bad with the new Sonnetar?
Anyway, I contacted Don up at DAG and he is going to make the necessary adjustments. When it gets back I'll take it for another spin and see how things turn out. And Peter, I was with you. I thought that the camera and lens had to be sent together but Don said that wasn't necessary.