Keep in mind that (for scans at least) scratches & dust on slides are harder to see. On negatives they will show up white, on positives they will show up black.
Are you referring to slides only, or b/w film negatives? On the first roll I developed at home, some of the negs I scanned had what I thought were scratches on them, or dust. I figured I was careless somehow. Can anyone interpret the white marks on this? At first I thought "dog hair," but the marks are way too small. Dust?