The reason for you not to understand the problem very well is that you don't seem to get that there is no helical in the 50mm lenses for both the Contax RF and Nikon RF systems. The helical is built in the camera.
So it is the combination of the camera working distance (helical flange to film plane distance) and the "50mm" lenses optics design which makes it for the not equal native focal lengths of the two "50mm" for these two "similar", yet very different at the same time, systems.
This also explains why any other lens than the 50mm doesn't work better, despite their own built-in helicals, because there the lens helical is mastered by the camera built-in helical as for the pitch.
If things were as simple as Mr Zeisscamera tries to say they are, do you think that Nippon Kogaku would have invested time and money at manufacturing their special 'C' 85, 105 and 135 lenses line for the Contax RF system ?
Brian has it all right and Mr Zeisscamera has it all wrong.