Is it sensible to compare them to say 50mm lenses for a 35mm camera (many «Pantar» lenses, many of them non-interchangeable) on the one hand, and a 75mm lens for a 120/220 camera (many «Novar» lenses, again, many of them non-interchangeable) on the other hand?
In general, Zeiss branded lenses for marketing reasons rather than from a purely engineering point of view. Two fundamentally different designs were sold as Sonnar, at least three as Biotar, and even Tele- and Apo-Tessars have little in common with Tessar types.
So far, I have found no source that can describe the differences between different Zeiss triplets (other than in focal length and speed) - pictures (even on patent literature) often display some generic triplet type. At the end of the 1920s, Zeiss must have had something like a dozen different triplets, as each maker they had absorbed must have had at least one (I can identify the triplet names Triotar, Nettar, Hypar, Ernon, Triplet and Anastigmat just from the catalogues of the biggest companies merged into Zeiss Jena and Zeiss Ikon).
"Novar" quite obviously is a attempt to bring that into a unified Zeiss Jena naming scheme, and given that almost all triplet-bearing cameras received a Novar around 1929-31, it is quite likely that the designs often were not merged, but merely renamed according to a central nomenclature. Patents are not really helpful either - as the biggest, nastiest technology company of the era, Zeiss took out patents for every minor change plus some, to claim as much turf as possible, and it is hard to tell which of the many patents associated with that Zeiss lens brand actually is in a given lens.
Later, some of the old names reappeared, but I doubt that that was anything other than marketing/branding, as these names did not change in sync with technical revolutions (Zeiss stuck to their old names Novar and Triotar through lanthanum and coatings, when Agfa, Rodenstock and Voigtländer all changed lens names to celebrate these novelties).
Triotar made a reappearance on mid 1930s small format lenses, perhaps to pitch a "new" Zeiss product against the successful Meyer Trioplan. After 1945 the Triotar name did not really make it to the West - there was only a brief production of 85/4 Contax Triotars at Opton (probably as they were already too slow for a up-market rangefinder), and they resurrected it only at the very end of lens mass production (IIRC as a license to Rollei only). But CZJ in the GDR continued making triplets under that name until they took over Meyer as well and relegated lesser lens production to them.
Pantar was no triplet type to start with, but a Goerz brand name for a advanced Wide Double Anastigmat - its name first appeared on Oberkochen 35mm triplet lenses in the fifties, perhaps to bring in associations of a former quality lens from the pool of trademarks owned by Zeiss, Novar being firmly associated with the then already old-fashioned folders and Triotar then perhaps considered unsuitable by being in continuous Jena/GDR use.