I've got used lenses which came with a clear filter, and I keep on using it, but I don't seek them out.
On any lens, a filter will compromise image quality to some degree, it's basically like shooting through a window all the time. Of course filter glass is much better, clearer, and thinner than most windows, but you get the point.
Whether you'll notice any degradation in quality is another matter, I'd say probably not.
It's a personal choice really, I just use what my cameras come with, or what is convenient.