Again, many thanks for all the help here. What a great forum! If I understand the whole in camera adjustment thing, the DR setting should only affect the jpeg. My isssue was with the RAW output. None the less, I shoot a third of a stop under most of the time and sometimes even more. I'm trying shooting at 0 under to see what goes. The other compensation is to use the brush tool to reduce noise where it is most visible and as suggested, no sharpening. That has had the most affect toward improving my opinion of the image quality. The one factor that was most influential for buying the camera was the increased detail. I rather blindly continued the same workflow as the XPro1 and it's apparent that was a mistake.
No - the DR expansion modes very much affect RAW files.
Firstly lets take a quick look at how digital ISO works
ISO above native (200 for the Fuji) works by UNDEREXPOSING the raw file, then applyng a global exposure push digitally, 1 stop underexposure and 1 stop push for iso 400 2 for 800 etc
This is basically the same as using the exposure slider in LR (or whatever)
When we import the raw in to our editing app, the ISO and corresponding exposure push are in the meta data of the raw, and the app acts on the info
The DR expansion modes work by under exposing the raw file 1 or 2 stops (as per ISO 400 or 800)
Then FOR THE SOCOC JPEG the shadows and midtones are lifted as the jpeg is created
This is basically the same as using the shadow slider in LR
But the RAW file doesn't get the global exposure meta data (you want to retain highlights, not apply a global positive exposure value, which is the antithesis of highlight preservation), so you end up with a RAW file that's 1 or 2 stops under exposed (depending on DR200 or 400 mode)
What's the easiest way to make a noisy file? Underexpose it, which is what the DR modes do
The largest amount of DR is available at base ISO
You'll get a cleaner image shooting @ iso200 and exposing for critical highlights and doing the shadow recovery yourself in post, than you will using DR400 and throwing away data before you even take the RAF from th SD card