I am sorry to bring up a dead thread but I think my experience (below) should be useful for other R-D1 users.
Since I get my used R-D1 a couple of days ago I run a dead/hot pixel test software to find out that I have no dead pixels but many hot. There were 28 consistent hot pixels 1/30s shots with lens cap on. 3 of them are clusters (3 to 6 neighboring pixels) so if I count clusters as one, the number of hot pixels & spots was 18. When I shoot at ISO 200 at AE, the exposure was around 4 seconds and hot pixels were around 120, and ISO 1600 the exposure was around 10 seconds and it caused around 300 hot pixels. (and I did the test after not using the camera for several hours), obviously noise kicked in as well.
What I did was using the dead pixel correction feature in the camera menu. I set the ISO at 1600 (no such instruction and I believe ISO setting has nothing to do with it but in case it happens to be related, by logic I choose top ISO) and run it. It took a couple of seconds and after it ended I took another set of lens-cap-on shots at 1/30s and at AE which causes 8-10 seconds long exposure). Even though the correction is for dead pixels it amazingly worked at my first try and all hot pixels are gone for 1/30s shot, however long exposure shots still had many hot pixels so I went back to the manu and turned on the long exposure noise correction. Took another set of lens-cap-on shots at ISO 200 and 1600 at AE and analysed the image. There were only 3 in ISO 200 shot (ard. 4 second exposure) and only 18 at 1600 (ard. 10 second exposure) which are quite acceptable to me.
I feel as if I hit the jackpot ! Well, almost 🙂 Hope this serves to other R-D1 users as well.